Relevant publications

Quinoa

Rey E, Abrouk M, Dufau I, Rodde N, Noha Saber N, Cizkova J, Fiene G, Stanschewski C, Jarvis DE, Jellen EN, Maughan PJ, von Baer I, Troukhan M, Kravchuk M, Hribova E, Cauet S, Krattinger SG, Tester M (2024) Genome assembly of a diversity panel of Chenopodium quinoa. Scientific Data 11, 1366 Website

Kobayashi Y, Hirakawa H, Shirasawa K, Nishimura K, Fujii K, Oros R, Almanza GR, Nagatoshi Y, Yasui Y, Fujita Y (2024) Chromosome-level genome assemblies for two quinoa inbred lines from northern and southern highlands of Altiplano where quinoa originated. Frontiers in Plant Science 15 Website

Rey E, Maughan PJ, Maumus F, Lewis D, Wilson L, Fuller J, Schmöckel SM, Jellen EN, Tester M, Jarvis DE. (2023). A chromosome-scale assembly of the quinoa genome provides insights into the structure and dynamics of its subgenomes. Communications Biology 6:1263 Website

Jarvis DE, Ho YS, Lightfoot DJ, Schmöckel SM, Li B, Borm T, Ohyanagi H, Mineta K, Michell CT, Saber N, Kharbatia NM, Rupper RR, Sharp AR, Dally N, Boughton BA, Woo YH, Gao G, Schijlen E, Guo X, Momin AA, Negrão S, Al-Babili S, Gehring C, Roessner U, Jung C, Murphy K, Arold ST, Gojobori T, van der Linden CG, van Loo EN, Jellen EN, Maughan PJ, Tester M. (2017). The genome of Chenopodium quinoa. Nature 542:307 Website

Chenopodium species

Jaggi KE, Krak K, Štorchová H, MandákB, Marcheschi A, Belyayev A, Jellen EN, Sproul J, Jarvis DE, Maughan PJ (2025) A Pangenome Reveals LTR Repeat Dynamics as a Major Driver of Genome Evolution in Chenopodium. The Plant Genome Website

Frandsen P, Borgmeier A, Bratsman S, Cox B, Gottfredson S, Hadfield R, Harding G, Kokkonen A, Lin YF, Linde J, Mulford T, Parker A, Smith S, Torres K, Young L, Mangelson H, Jellen EN, Maughan PJ, Jarvis DE (2025) A chromosome-scale genome assembly and annotation of the tetraploid herb “epazote” (Dysphania ambrosioides), G3 Genes|Genomes|Genetics Website

Ludwig CD, Maughan PJ, Jellen EN, Davis TM. (2025) The Genome of Chenopodium ficifolium: Developing Genetic Resources and a Diploid Model System for Allotetraploid Quinoa.Website

Maughan PJ, Jarvis DE, de la Cruz-Torres E, Jaggi KE, Warner HC, Marcheschi AK, Bertero HD, Gomez-Pando L, Fuentes F, Mayta-Anco ME, Curti R, Rey E, Tester M, Jellen EN. (2024). North American pitseed goosefoot (Chenopodium berlandieri) is a genetic resource to improve Andean quinoa (C. quinoa). Scientific Reports 14:12345 Website

Young LA, Maughan PJ, Jarvis DE, Hunt SP, Curti RN, Bertero D, Filippi GA, Pospíšilíková T, Krak K, Mandák B, Jellen EN. (2023). A chromosome-scale reference of Chenopodium watsonii helps elucidate relationships within the North American A-genome Chenopodium species and with quinoa. The Plant Genome e20349 Website

Jarvis DE, Sproul JS, Navarro-Domínguez B, Krak K, Jaggi K, Huang Y-F, Huang T-Y, Lin TC, Jellen EN, Maughan PJ. (2022). Chromosome-scale genome assembly of the hexaploid Taiwanese goosefoot ‘djulis’ (Chenopodium formosanum). Genome Biology and Evolution 14:evac120 Website

Mangelson H, Jarvis DE, Mollinedo P, Rollano-Penaloza OM, Palma-Encinas VD, Gomez-Pando LR, Jellen EN, Maughan PJ. (2019). The genome of Chenopodium pallidicaule: An emerging Andean super grain. APPS 7:e11300 Website

Amaranthus

Graf C, Winkler T, Maughan PJ, Stetter MG (2025) Domestication shaped the chromatin landscape of grain amaranth. Nature Communications. Website

Lightfoot DJ, Jarvis DE, Ramaraj T, Lee R, Jellen EN, Maughan PJ. (2017). Single-molecule sequencing and Hi-C-based proximity-guided assembly of amaranth (Amaranthus hypochondriacus) chromosomes provide insights into genome evolution. BMC Biology 15:74 Website

Clouse JW, Adhikary D, Page JT, Ramaraj T, Deyholos MK, Udall JA, Fairbanks DJ, Jellen EN, Maughan PJ (2016) The Amaranth (Amaranthus hypochondriacus) Genome: Genome, Transcriptome and Physical Map Assembly. Plant Genome 9(1):1-14 Website